Publications

Preprints are available on bioRxiv.

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1.

Sahtoe, Danny D.; Coscia, Adrian; Mustafaoglu, Nur; Miller, Lauren M.; Olal, Daniel; Vulovic, Ivan; Yu, Ta-Yi; Goreshnik, Inna; Lin, Yu-Ru; Clark, Lars; Busch, Florian; Stewart, Lance; Wysocki, Vicki H.; Ingber, Donald E.; Abraham, Jonathan; Baker, David

Transferrin receptor targeting by de novo sheet extension Journal Article

In: Proceedings of the National Academy of Sciences, 2021.

Abstract | Links | BibTeX

2.

Butterfield, Gabriel L. *; Lajoie, Marc J. *; Gustafson, Heather H.; Sellers, Drew L.; Nattermann, Una; Ellis, Daniel; Bale, Jacob B.; Ke, Sharon; Lenz, Garreck H.; Yehdego, Angelica; Ravichandran, Rashmi; Pun, Suzie H.; King, Neil P.; Baker, David

Evolution of a designed protein assembly encapsulating its own RNA genome Journal Article

In: Nature, 2017, ISSN: 1476-4687.

Abstract | Links | BibTeX

3.

Hsia*, Yang; Bale*, Jacob B.; Gonen, Shane; Shi, Dan; Sheffler, William; Fong, Kimberly K.; Nattermann,; Xu, Chunfu; Huang, Po-Ssu; Ravichandran, Rashmi; Yi, Sue; Davis, Trisha N.; Gonen, Tamir; King, Neil P.; Baker, David

Design of a hyperstable 60-subunit protein icosahedron Journal Article

In: Nature, 2016.

Abstract | Links | BibTeX

4.

Procko, Erik; Berguig, Geoffrey Y; Shen, Betty W; Song, Yifan; Frayo, Shani; Convertine, Anthony J; Margineantu, Daciana; Booth, Garrett; Correia, Bruno E; Cheng, Yuanhua; Schief, William R; Hockenbery, David M; Press, Oliver W; Stoddard, Barry L; Stayton, Patrick S; Baker, David

A computationally designed inhibitor of an epstein-barr viral bcl-2 protein induces apoptosis in infected cells. Journal Article

In: Cell, vol. 157, pp. 1644-56, 2014, ISSN: 1097-4172.

Abstract | Links | BibTeX

5.

Boissel, Sandrine; Jarjour, Jordan; Astrakhan, Alexander; Adey, Andrew; Gouble, Agn`es; Duchateau, Philippe; Shendure, Jay; Stoddard, Barry L; Certo, Michael T; Baker, David; Scharenberg, Andrew M

megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering. Journal Article

In: Nucleic acids research, 2013, ISSN: 1362-4962.

Abstract | Links | BibTeX

6.

Bergeron, Julien R C; Worrall, Liam J; Sgourakis, Nikolaos G; DiMaio, Frank; Pfuetzner, Richard A; Felise, Heather B; Vuckovic, Marija; Yu, Angel C; Miller, Samuel I; Baker, David; Strynadka, Natalie C J

A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly Journal Article

In: PLoS pathogens, vol. 9, pp. e1003307, 2013, ISSN: 1553-7374.

Abstract | Links | BibTeX

7.

Payne, G S; Baker, D; van Tuinen, E; Schekman, R

Protein transport to the vacuole and receptor-mediated endocytosis by clathrin heavy chain-deficient yeast Journal Article

In: The Journal of cell biology, vol. 106, pp. 1453-61, 1988, ISSN: 0021-9525.

Abstract | Links | BibTeX

 

2022

FROM THE LAB

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2021

FROM THE LAB

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Sahtoe, Danny D., Coscia, Adrian, Mustafaoglu, Nur, Miller, Lauren M., Olal, Daniel, Vulovic, Ivan, Yu, Ta-Yi, Goreshnik, Inna, Lin, Yu-Ru, Clark, Lars, Busch, Florian, Stewart, Lance, Wysocki, Vicki H., Ingber, Donald E., Abraham, Jonathan, Baker, David

Transferrin receptor targeting by de novo sheet extension Journal Article

In: Proceedings of the National Academy of Sciences, 2021.

Abstract | Links

COLLABORATOR LED

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2020

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2019

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2018

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2017–1998

ALL PAPERS

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2017

Butterfield, Gabriel L.* and Lajoie, Marc J.* and Gustafson, Heather H. and Sellers, Drew L. and Nattermann, Una and Ellis, Daniel and Bale, Jacob B. and Ke, Sharon and Lenz, Garreck H. and Yehdego, Angelica and Ravichandran, Rashmi and Pun, Suzie H. and King, Neil P. and Baker, David

Evolution of a designed protein assembly encapsulating its own RNA genome Journal Article

In: Nature, 2017, ISSN: 1476-4687.

Abstract | Links

2016

Yang Hsia*, Jacob B. Bale*, Shane Gonen, Dan Shi, William Sheffler, Kimberly K. Fong, Nattermann, Chunfu Xu, Po-Ssu Huang, Rashmi Ravichandran, Sue Yi, Trisha N. Davis, Tamir Gonen, Neil P. King, David Baker

Design of a hyperstable 60-subunit protein icosahedron Journal Article

In: Nature, 2016.

Abstract | Links

2014

Erik Procko, Geoffrey Y Berguig, Betty W Shen, Yifan Song, Shani Frayo, Anthony J Convertine, Daciana Margineantu, Garrett Booth, Bruno E Correia, Yuanhua Cheng, William R Schief, David M Hockenbery, Oliver W Press, Barry L Stoddard, Patrick S Stayton, David Baker

A computationally designed inhibitor of an epstein-barr viral bcl-2 protein induces apoptosis in infected cells. Journal Article

In: Cell, vol. 157, pp. 1644-56, 2014, ISSN: 1097-4172.

Abstract | Links

2013

Sandrine Boissel, Jordan Jarjour, Alexander Astrakhan, Andrew Adey, Agn`es Gouble, Philippe Duchateau, Jay Shendure, Barry L Stoddard, Michael T Certo, David Baker, Andrew M Scharenberg

megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering. Journal Article

In: Nucleic acids research, 2013, ISSN: 1362-4962.

Abstract | Links

Julien R C Bergeron, Liam J Worrall, Nikolaos G Sgourakis, Frank DiMaio, Richard A Pfuetzner, Heather B Felise, Marija Vuckovic, Angel C Yu, Samuel I Miller, David Baker, Natalie C J Strynadka

A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly Journal Article

In: PLoS pathogens, vol. 9, pp. e1003307, 2013, ISSN: 1553-7374.

Abstract | Links

1988

G S Payne, D Baker, E van Tuinen, R Schekman

Protein transport to the vacuole and receptor-mediated endocytosis by clathrin heavy chain-deficient yeast Journal Article

In: The Journal of cell biology, vol. 106, pp. 1453-61, 1988, ISSN: 0021-9525.

Abstract | Links