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437 entries « 9 of 9 »

1998

Grantcharova, V P; Riddle, D S; Santiago, J V; Baker, David

Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain Journal Article

Nature structural biology, 5 , pp. 714-20, 1998, ISSN: 1072-8368.

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Kim, D E; Gu, H; Baker, D

The sequences of small proteins are not extensively optimized for rapid folding by natural selection Journal Article

Proceedings of the National Academy of Sciences of the United States of America, 95 , pp. 4982-6, 1998, ISSN: 0027-8424.

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Rank, J A; Baker, David

Contributions of solvent-solvent hydrogen bonding and van der Waals interactions to the attraction between methane molecules in water Journal Article

Biophysical chemistry, 71 , pp. 199-204, 1998, ISSN: 0301-4622.

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Plaxco, K W; Simons, K T; Baker, David

Contact order, transition state placement and the refolding rates of single domain proteins Journal Article

Journal of molecular biology, 277 , pp. 985-94, 1998, ISSN: 0022-2836.

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Plaxco, K W; Riddle, D S; Grantcharova, V; Baker, David

Simplified proteins: minimalist solutions to the protein folding problem Journal Article

Current opinion in structural biology, 8 , pp. 80-5, 1998, ISSN: 0959-440X.

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Yi, Q; Bystroff, C; Rajagopal, P; Klevit, R E; Baker, David

Prediction and structural characterization of an independently folding substructure in the src SH3 domain Journal Article

Journal of molecular biology, 283 , pp. 293-300, 1998, ISSN: 0022-2836.

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1997

Grantcharova, V P; Baker, David

Folding dynamics of the src SH3 domain Journal Article

Biochemistry, 36 , pp. 15685-92, 1997, ISSN: 0006-2960.

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Gu, H; Kim, David E; Baker, David

Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein Journal Article

Journal of molecular biology, 274 , pp. 588-96, 1997, ISSN: 0022-2836.

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Doyle, R; Simons, K; Qian, H; Baker, David

Local interactions and the optimization of protein folding Journal Article

Proteins, 29 , pp. 282-91, 1997, ISSN: 0887-3585.

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Riddle, D S; Santiago, J V; Bray-Hall, S T; Doshi, N; Grantcharova, V P; Yi, Q; Baker, David

Functional rapidly folding proteins from simplified amino acid sequences Journal Article

Nature structural biology, 4 , pp. 805-9, 1997, ISSN: 1072-8368.

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Scalley, M L; Baker, David

Protein folding kinetics exhibit an Arrhenius temperature dependence when corrected for the temperature dependence of protein stability Journal Article

Proceedings of the National Academy of Sciences of the United States of America, 94 , pp. 10636-40, 1997, ISSN: 0027-8424.

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Han, K F; Bystroff, C; Baker, David

Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns Journal Article

Protein science, 6 , pp. 1587-90, 1997, ISSN: 0961-8368.

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Simons, K T; Kooperberg, C; Huang, E; Baker, David

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions Journal Article

Journal of molecular biology, 268 , pp. 209-25, 1997, ISSN: 0022-2836.

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Scalley, M L; Yi, Q; Gu, H; McCormack, A; Yates, J R; Baker, David

Kinetics of folding of the IgG binding domain of peptostreptococcal protein L. Journal Article

Biochemistry, 36 , pp. 3373-82, 1997, ISSN: 0006-2960.

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Rank, J A; Baker, David

A desolvation barrier to hydrophobic cluster formation may contribute to the rate-limiting step in protein folding Journal Article

Protein science, 6 , pp. 347-54, 1997, ISSN: 0961-8368.

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Bystroff, C; Baker, David

Blind predictions of local protein structure in CASP2 targets using the I-sites library Journal Article

Proteins, Suppl 1 , pp. 167-71, 1997, ISSN: 0887-3585.

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Yi, Q; Scalley, M L; Simons, K T; Gladwin, S T; Baker, David

Characterization of the free energy spectrum of peptostreptococcal protein L Journal Article

Folding & design, 2 , pp. 271-80, 1997, ISSN: 1359-0278.

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1996

Bystroff, C; Simons, K T; Han, K F; Baker, David

Local sequence-structure correlations in proteins Journal Article

Current opinion in biotechnology, 7 , pp. 417-21, 1996, ISSN: 0958-1669.

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Han, K F; Baker, David

Global properties of the mapping between local amino acid sequence and local structure in proteins Journal Article

Proceedings of the National Academy of Sciences of the United States of America, 93 , pp. 5814-8, 1996, ISSN: 0027-8424.

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Yi, Q; Baker, David

Direct evidence for a two-state protein unfolding transition from hydrogen-deuterium exchange, mass spectrometry, and NMR Journal Article

Protein science, 5 , pp. 1060-6, 1996, ISSN: 0961-8368.

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1995

Han, K F; Baker, David

Recurring local sequence motifs in proteins Journal Article

Journal of molecular biology, 251 , pp. 176-87, 1995, ISSN: 0022-2836.

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Gu, H; Yi, Q; Bray, S T; Riddle, D S; Shiau, A K; Baker, David

A phage display system for studying the sequence determinants of protein folding Journal Article

Protein science, 4 , pp. 1108-17, 1995, ISSN: 0961-8368.

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1994

Baker, D; Agard, D A

Influenza hemagglutinin: kinetic control of protein function. Journal Article

Structure (London, England : 1993), 2 , pp. 907-10, 1994, ISSN: 0969-2126.

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Baker, D; Agard, D A

Kinetics versus thermodynamics in protein folding. Journal Article

Biochemistry, 33 , pp. 7505-9, 1994, ISSN: 0006-2960.

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1993

Baker, D; Shiau, A K; Agard, D A

The role of pro regions in protein folding. Journal Article

Current Opinion in Cell Biology, 5 , pp. 966-70, 1993, ISSN: 0955-0674.

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Bystroff, C; Baker, D; Fletterick, R J; Agard, D A

PRISM: application to the solution of two protein structures Journal Article

Acta crystallographica. Section D, 49 , pp. 440-8, 1993, ISSN: 0907-4449.

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Baker, D; Bystroff, C; Fletterick, R J; Agard, D A

PRISM: topologically constrained phased refinement for macromolecular crystallography Journal Article

Acta crystallographica. Section D, 49 , pp. 429-39, 1993, ISSN: 0907-4449.

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Ruohola-Baker, H; Grell, E; Chou, T B; Baker, D; Jan, L Y; Jan, Y N

Spatially localized rhomboid is required for establishment of the dorsal-ventral axis in Drosophila oogenesis Journal Article

Cell, 73 , pp. 953-65, 1993, ISSN: 0092-8674.

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Baker, D; Krukowski, A E; Agard, D A

Uniqueness and the ab initio phase problem in macromolecular crystallography Journal Article

Acta crystallographica. Section D, 49 , pp. 186-92, 1993, ISSN: 0907-4449.

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D, Baker; HS, Chan; KA, Dill

Coordinate-Space Formulation of Polymer Lattice Cluster Theory Journal Article

Journal of Chemical Physics, 1993.

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1992

Baker, D; Silen, J L; Agard, D A

Protease pro region required for folding is a potent inhibitor of the mature enzyme Journal Article

Proteins, 12 , pp. 339-44, 1992, ISSN: 0887-3585.

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Baker, D; Sohl, J L; Agard, D A

A protein-folding reaction under kinetic control Journal Article

Nature, 356 , pp. 263-5, 1992, ISSN: 0028-0836.

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1991

Ruohola, H; Bremer, K A; Baker, D; Swedlow, J R; Jan, L Y; Jan, Y N

Role of neurogenic genes in establishment of follicle cell fate and oocyte polarity during oogenesis in Drosophila. Journal Article

Cell, 66 , pp. 433-49, 1991, ISSN: 0092-8674.

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1990

Baker, D; Wuestehube, L; Schekman, R; Botstein, D; Segev, N

GTP-binding Ypt1 protein and Ca2+ function independently in a cell-free protein transport reaction Journal Article

Proceedings of the National Academy of Sciences of the United States of America, 87 , pp. 355-9, 1990, ISSN: 0027-8424.

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1989

Baker, D; Schekman, R

Reconstitution of protein transport using broken yeast spheroplasts Journal Article

Methods in Cell Biology, 31 , pp. 127-41, 1989, ISSN: 0091-679X.

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1988

Baker, D; Hicke, L; Rexach, M; Schleyer, M; Schekman, R

Reconstitution of SEC gene product-dependent intercompartmental protein transport Journal Article

Cell, 54 , pp. 335-44, 1988, ISSN: 0092-8674.

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Payne, G S; Baker, D; van Tuinen, E; Schekman, R

Protein transport to the vacuole and receptor-mediated endocytosis by clathrin heavy chain-deficient yeast Journal Article

The Journal of cell biology, 106 , pp. 1453-61, 1988, ISSN: 0021-9525.

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437 entries « 9 of 9 »