Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns

TitleThree-dimensional structures and contexts associated with recurrent amino acid sequence patterns
Publication TypeJournal Article
Year of Publication1997
AuthorsHan, K. F., Bystroff C., & Baker D.
JournalProtein science
Volume6
Issue7
Pagination1587-90
Date Published1997 Jul
ISSN0961-8368
KeywordsAlgorithms, Amino Acid Sequence, Cluster Analysis, Databases, Factual, Pattern Recognition, Automated, Primary Publication, Protein Conformation, Sequence Alignment
Abstract

We have used cluster analysis to identify recurring sequence patterns that transcend protein family boundaries. A subset of these patterns occur predominantly in a single type of local structure in proteins. Here we characterize the three-dimensional structures and contexts in which these sequence patterns occur, with particular attention to the interactions responsible for their structural selectivity.

Alternate JournalProtein Sci.
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